1. 2019
  2. Published

    Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs

    Phelan, J. E., O'Sullivan, D. M., Machado, D., Ramos, J., Oppong, Y. E. A., Campino, S., O'Grady, J., McNerney, R., Hibberd, M. L., Viveiros, M., Huggett, J. F. & Clark, T. G., 24 Jun 2019, In : Genome Medicine. 11, 1, 41.

    Research output: Contribution to journalArticle

  3. Published

    Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection

    Charalampous, T., Kay, G., Richardson, H., Aydin, A., Baldan, R., Jeanes, C., Rae, D., Grundy, S., Turner, D. J., Wain, J., Leggett, R. M., Livermore, D. & O'Grady, J., 24 Jun 2019, In : Nature Biotechnology. 37, p. 783–792

    Research output: Contribution to journalArticle

  4. Published

    Metagenomic Sequencing of Respiratory Microbial Communities for Detection of Etiologic Pathogens of Pneumonia in Mechanically-Ventilated Adult Patients

    Nettles, R., Yang, L., Qin, S., Bednash, J. S., Fitch, A., Evankovich, J., Bain, W., Dunlap, D. G., Shah, F., Rapport, S., Lee, J., Morris, A., McVerry, B. J., O'Grady, J. & Kitsios, G., May 2019.

    Research output: Contribution to conferenceAbstract

  5. Published

    Evaluation of multiplex tandem PCR (MT-PCR) assays for the detection of bacterial resistance genes among Enterobacteriaceae in clinical urines

    Schmidt, K., Stanley, K. K., Hale, R., Smith, L., Wain, J., O'Grady, J. & Livermore, D. M., 1 Feb 2019, In : Journal of Antimicrobial Chemotherapy. 74, 2, p. 349–356 8 p.

    Research output: Contribution to journalArticle

  6. Published

    A powerful, non-invasive test to rule out infection

    O’Grady, J., 2019, In : Nature Microbiology. 4, 4, p. 554-555 2 p.

    Research output: Contribution to journalComment/debate

  7. 2018
  8. Published

    Leprosy at the edge of Europe—Biomolecular, isotopic and osteoarchaeological findings from medieval Ireland

    Taylor, G. M., Murphy, E. M., Mendum, T. A., Pike, A. W. G., Linscott, B., Wu, H., O’Grady, J., Richardson, H., O’Donovan, E., Troy, C. & Stewart, G. R., 26 Dec 2018, In : PLoS One. 13, 12, e0209495.

    Research output: Contribution to journalArticle

  9. Published

    Nanopore sequencing and assembly of a human genome with ultra-long reads

    Jain, M., Koren, S., Miga, K. H., Quick, J., Rand, A. C., Sasani, T. A., Tyson, J. R., Beggs, A. D., Dilthey, A. T., Fiddes, I. T., Malla, S., Marriott, H., Nieto, T., O'Grady, J., Olson, H. E., Pedersen, B. S., Rhie, A., Richardson, H., Quinlan, A. R., Snutch, T. P. & 6 others, Tee, L., Paten, B., Phillippy, A. M., Simpson, J. T., Loman, N. J. & Loose, M., Jan 2018, In : Nature Biotechnology. 36, p. 338–345 8 p.

    Research output: Contribution to journalArticle

  10. Published

    Diagnosis of Lower Respiratory Tract Infections using nanopore sequencing

    Charalampous, T., Richardson, H., Kay, G., Baldan, R., Jeanes, C., Turner, D., Wain, J., Livermore, D., Leggett, R. & O'Grady, J., 2018, In : European Respiratory Journal. 52, 2 p., PA5308.

    Research output: Contribution to journalAbstract

  11. Published

    The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

    Angers-Loustau, A., Petrillo, M., Bengtsson-Palme, J., Berendonk, T., Blais, B., Chan, K-G., Coque, T. M., Hammer, P., Heß, S., Kagkli, D. M., Krumbiegel, C., Lanza, V. F., Madec, J-Y., Naas, T., O'Grady, J., Paracchini, V., Rossen, J. W. A., Ruppé, E., Vamathevan, J., Venturi, V. & 1 others, Van den Eede, G., 2018, In : F1000Research. 7

    Research output: Contribution to journalReview article

  12. 2017
  13. Published

    Diagnosing antimicrobial resistance

    Burnham, C-A. D., Leeds, J., Nordmann, P., O'Grady, J. & Patel, J., 12 Oct 2017, In : Nature Reviews Microbiology. 15, 11, p. 697-703 7 p.

    Research output: Contribution to journalReview article

ID: 29817