1. Published

    Tuberculosis Trends in Saudis and Non-Saudis in the Kingdom of Saudi Arabia – A 10 Year Retrospective Study (2000–2009).

    Abouzeid, M. S., Zumla, A. I., Felemban, S., Alotaibi, B., O'Grady, J. & Memish, Z. A., 20 Jun 2012, In : PLoS One. 7, 6, e39478.

    Research output: Contribution to journalArticle

  2. Published

    The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

    Angers-Loustau, A., Petrillo, M., Bengtsson-Palme, J., Berendonk, T., Blais, B., Chan, K-G., Coque, T. M., Hammer, P., Heß, S., Kagkli, D. M., Krumbiegel, C., Lanza, V. F., Madec, J-Y., Naas, T., O'Grady, J., Paracchini, V., Rossen, J. W. A., Ruppé, E., Vamathevan, J., Venturi, V. & 1 others, Van den Eede, G., 2018, In : F1000Research. 7

    Research output: Contribution to journalReview article

  3. Published

    MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

    Ashton, P., Nair, S., Dallman, T., Rubino, S., Rabsch, W., Mwaigwisya, S., Wain, J. & O'Grady, J., Mar 2015, In : Nature Biotechnology. 33, 3, p. 296–300 5 p.

    Research output: Contribution to journalArticle

  4. Published

    CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing

    Baker, D. J., Kay, G. L., Aydin, A., Le-Viet, T., Rudder, S., Tedim, A. P., Kolyva, A., Diaz, M., de Oliveira Martins, L., Alikhan, N-F., Meadows, L., Bell, A., Gurierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. G. & 9 others, Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A. E., Webber, M. A., Dervisevic, S., Page, A. J. & O'Grady, J., 24 Jun 2020, BioRxiv: biorxiv.

    Research output: Working paper

  5. Published

    New Global Estimates of Malaria Deaths.

    Bates, M., O'Grady, J., Mudenda, V., Shibemba, A. & Zumla, A., 2012, In : The Lancet. 380, 9841, p. 560-561 2 p.

    Research output: Contribution to journalLetter

  6. Published

    Assessment of the Xpert MTB/RIF Assay for Diagnosis of Tuberculosis with Gastric Lavage Aspirates in Children in Sub-Saharan Africa: A Prospective Descriptive Study

    Bates, M., O'Grady, J., Maeurer, M., Tembo, J., Chilukutu, L., Chabala, C., Kasonde, R., Mulota, P., Mzyece, J., Chomba, M., Mukonda, L., Mumba, M., Kapata, N., Rachow, A., Clowes, P., Hoelscher, M., Mwaba, P. & Zumla, A., 2013, In : The Lancet Infectious Diseases. 13, 1, p. 36-42 7 p.

    Research output: Contribution to journalArticle

  7. Published

    Evaluation of the burden of unsuspected pulmonary tuberculosis and co-morbidity with non-communicable diseases in sputum producing adult inpatients

    Bates, M., O'Grady, J., Mwaba, P., Chilukutu, L., Mzyece, J., Cheelo, B., Chilufya, M., Mukonda, L., Mumba, M., Tembo, J., Chomba, M., Kapata, N., Rachow, A., Clowes, P., Maeurer, M., Hoelscher, M. & Zumla, A., 27 Jul 2012, In : PLoS One. 7, 7, e40774.

    Research output: Contribution to journalArticle

  8. Published

    Use of the Xpert MTB/RIF assay for diagnosing pulmonary tuberculosis comorbidity and multidrug-resistant TB in obstetrics and gynaecology inpatient wards at the University Teaching Hospital, Lusaka, Zambia

    Bates, M., Ahmed, Y., Chilukutu, L., Tembo, J., Cheelo, B., Sinyangwe, S., Kapata, N., Maeurer, M., O'Grady, J., Mwaba, P. & Zumla, A., Sep 2013, In : Tropical Medicine & International Health. 18, 9, p. 1134-40 7 p.

    Research output: Contribution to journalArticle

  9. Published

    Application of highly portable MinION nanopore sequencing technology for the monitoring of nosocomial tuberculosis infection

    Bates, M., Polepole, P., Kapata, N., Loose, M. & O'Grady, J., Dec 2016, In : International Journal of Mycobacteriology. 5 Suppl 1, p. S24

    Research output: Contribution to journalArticle

  10. Published

    Molecular Diagnosis of Active Pulmonary Tuberculosis.

    Bateson, A., Reddington, K. & O'Grady, J., 2012, Tuberculosis: Laboratory Diagnosis and Treatment Strategies. McHugh, T. (ed.). CABI Publishing

    Research output: Chapter in Book/Report/Conference proceedingChapter

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