1. Published

    CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing

    Baker, D. J., Kay, G. L., Aydin, A., Le-Viet, T., Rudder, S., Tedim, A. P., Kolyva, A., Diaz, M., de Oliveira Martins, L., Alikhan, N-F., Meadows, L., Bell, A., Gurierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. G. & 9 others, Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A. E., Webber, M. A., Dervisevic, S., Page, A. J. & O'Grady, J., 24 Jun 2020, BioRxiv: biorxiv.

    Research output: Working paper

  2. Published
  3. Published

    Rapid and Point-of-Care Testing in Respiratory Tract Infections: An Antibiotic Guardian?

    Dhesi, Z., Enne, V. I., O'Grady, J., Gant, V. & Livermore, D. M., 12 Jun 2020, In : ACS Pharmacology & Translational Science. 3, 3, p. 401-417 17 p.

    Research output: Contribution to journalReview article

  4. Published

    Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

    Reddington, K., Eccles, D., O'Grady, J., Drown, D. M., Hansen, L. H., Nielsen, T. K., Ducluzeau, A-L., Leggett, R. M., Heavens, D., Peel, N., Snutch, T. P., Bayega, A., Oikonomopoulos, S., Ragoussis, I., Barry, T., van der Helm, E., Jolic, D., Richardson, H., Jansen, H., Tyson, J. R. & 2 others, Jain, M. & Brown, B. L., 10 Jun 2020, In : GigaScience. 9, 6, giaa053.

    Research output: Contribution to journalArticle

  5. Published

    Preliminary evaluation of a rapid lateral flow calprotectin test for the diagnosis of prosthetic joint infection

    Trotter, A. J., Dean, R., Whitehouse, C. E., Mikalsen, J., Hill, C., Brunton-Sim, R., Kay, G. L., Shakokani, M., Durst, A. Z. E., Wain, J., Mcnamara, I. & O’Grady, J., 5 May 2020, In : Bone and Joint Research. 9, 5, p. 202-210 9 p.

    Research output: Contribution to journalArticle

  6. Published

    Diagnosis of Lower Respiratory Tract Infections using nanopore sequencing

    Charalampous, T., Richardson, H., Kay, G., Baldan, R., Jeanes, C., Turner, D., Wain, J., Livermore, D., Leggett, R. & O'Grady, J., 2018, In : European Respiratory Journal. 52, 2 p., PA5308.

    Research output: Contribution to journalAbstract

  7. Published

    Co-infections: potentially lethal and unexplored in COVID-19

    Cox, M. J., Loman, N., Bogaert, D. & O'Grady, J., May 2020, In : The Lancet Microbe. 1, 1, 1 p., e11.

    Research output: Contribution to journalComment/debate

  8. Published

    Application of highly portable MinION nanopore sequencing technology for the monitoring of nosocomial tuberculosis infection

    Bates, M., Polepole, P., Kapata, N., Loose, M. & O'Grady, J., Dec 2016, In : International Journal of Mycobacteriology. 5 Suppl 1, p. S24

    Research output: Contribution to journalArticle

  9. Published

    Diagnosing antimicrobial resistance

    Burnham, C-A. D., Leeds, J., Nordmann, P., O'Grady, J. & Patel, J., 12 Oct 2017, In : Nature Reviews Microbiology. 15, 11, p. 697-703 7 p.

    Research output: Contribution to journalReview article

  10. Published

    The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

    Angers-Loustau, A., Petrillo, M., Bengtsson-Palme, J., Berendonk, T., Blais, B., Chan, K-G., Coque, T. M., Hammer, P., Heß, S., Kagkli, D. M., Krumbiegel, C., Lanza, V. F., Madec, J-Y., Naas, T., O'Grady, J., Paracchini, V., Rossen, J. W. A., Ruppé, E., Vamathevan, J., Venturi, V. & 1 others, Van den Eede, G., 2018, In : F1000Research. 7

    Research output: Contribution to journalReview article

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