1. Published

    Tuberculosis Trends in Saudis and Non-Saudis in the Kingdom of Saudi Arabia – A 10 Year Retrospective Study (2000–2009).

    Abouzeid, M. S., Zumla, A. I., Felemban, S., Alotaibi, B., O'Grady, J. & Memish, Z. A., 20 Jun 2012, In : PLoS One. 7, 6, e39478.

    Research output: Contribution to journalArticle

  2. Published

    The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

    Angers-Loustau, A., Petrillo, M., Bengtsson-Palme, J., Berendonk, T., Blais, B., Chan, K-G., Coque, T. M., Hammer, P., Heß, S., Kagkli, D. M., Krumbiegel, C., Lanza, V. F., Madec, J-Y., Naas, T., O'Grady, J., Paracchini, V., Rossen, J. W. A., Ruppé, E., Vamathevan, J., Venturi, V. & 1 others, Van den Eede, G., 2018, In : F1000Research. 7

    Research output: Contribution to journalReview article

  3. Published

    MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

    Ashton, P., Nair, S., Dallman, T., Rubino, S., Rabsch, W., Mwaigwisya, S., Wain, J. & O'Grady, J., Mar 2015, In : Nature Biotechnology. 33, 3, p. 296–300 5 p.

    Research output: Contribution to journalArticle

  4. Published

    CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

    Baker, D. J., Kay, G. L., Aydin, A., Le-Viet, T., Rudder, S., Tedim, A. P., Kolyva, A., Diaz, M., de Oliveira Martins, L., Alikhan, N-F., Meadows, L., Bell, A., Gurierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. G. & 9 others, Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A. E., Webber, M. A., Dervisevic, S., Page, A. J. & O'Grady, J., 24 Jun 2020, BioRxiv: BioMed Central.

    Research output: Working paper

  5. Published

    CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

    Baker, D. J., Aydin, A., Le Viet, T., Kay, G. L., Rudder, S., de Oliveira Martins, L., Tedim, A. P., Kolyva, A., Diaz, M., Alikhan, N-F., Meadows, L., Bell, A., Gutierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. & 9 others, Franslem-Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A., Webber, M., Dervisevic, S., Page, A. J. & O'Grady, J., 9 Feb 2021, In : Genome Medicine. 13, 21.

    Research output: Contribution to journalArticle

  6. Published

    Assessment of the Xpert MTB/RIF Assay for Diagnosis of Tuberculosis with Gastric Lavage Aspirates in Children in Sub-Saharan Africa: A Prospective Descriptive Study

    Bates, M., O'Grady, J., Maeurer, M., Tembo, J., Chilukutu, L., Chabala, C., Kasonde, R., Mulota, P., Mzyece, J., Chomba, M., Mukonda, L., Mumba, M., Kapata, N., Rachow, A., Clowes, P., Hoelscher, M., Mwaba, P. & Zumla, A., 2013, In : The Lancet Infectious Diseases. 13, 1, p. 36-42 7 p.

    Research output: Contribution to journalArticle

  7. Published

    New Global Estimates of Malaria Deaths.

    Bates, M., O'Grady, J., Mudenda, V., Shibemba, A. & Zumla, A., 2012, In : The Lancet. 380, 9841, p. 560-561 2 p.

    Research output: Contribution to journalLetter

  8. Published

    Evaluation of the burden of unsuspected pulmonary tuberculosis and co-morbidity with non-communicable diseases in sputum producing adult inpatients

    Bates, M., O'Grady, J., Mwaba, P., Chilukutu, L., Mzyece, J., Cheelo, B., Chilufya, M., Mukonda, L., Mumba, M., Tembo, J., Chomba, M., Kapata, N., Rachow, A., Clowes, P., Maeurer, M., Hoelscher, M. & Zumla, A., 27 Jul 2012, In : PLoS One. 7, 7, e40774.

    Research output: Contribution to journalArticle

  9. Published

    Use of the Xpert MTB/RIF assay for diagnosing pulmonary tuberculosis comorbidity and multidrug-resistant TB in obstetrics and gynaecology inpatient wards at the University Teaching Hospital, Lusaka, Zambia

    Bates, M., Ahmed, Y., Chilukutu, L., Tembo, J., Cheelo, B., Sinyangwe, S., Kapata, N., Maeurer, M., O'Grady, J., Mwaba, P. & Zumla, A., Sep 2013, In : Tropical Medicine & International Health. 18, 9, p. 1134-40 7 p.

    Research output: Contribution to journalArticle

  10. Published

    Application of highly portable MinION nanopore sequencing technology for the monitoring of nosocomial tuberculosis infection

    Bates, M., Polepole, P., Kapata, N., Loose, M. & O'Grady, J., Dec 2016, In : International Journal of Mycobacteriology. 5 Suppl 1, p. S24

    Research output: Contribution to journalArticle

  11. Published

    Molecular Diagnosis of Active Pulmonary Tuberculosis.

    Bateson, A., Reddington, K. & O'Grady, J., 2012, Tuberculosis: Laboratory Diagnosis and Treatment Strategies. McHugh, T. (ed.). CABI Publishing

    Research output: Chapter in Book/Report/Conference proceedingChapter

  12. Published

    Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

    Brinda, K., Callendrello, A., Ma, K. C., MacFadden, D. R., Charalampous, T., Lee, R. S., Cowley, L., Wadsworth, C. B., Grad, Y. H., Kucherov, G., O'Grady, J., Baym, M. & Hanage, W. P., Mar 2020, In : Nature Microbiology. 5, 3, p. 455-464 10 p.

    Research output: Contribution to journalArticle

  13. Published

    Diagnosing antimicrobial resistance

    Burnham, C-A. D., Leeds, J., Nordmann, P., O'Grady, J. & Patel, J., 12 Oct 2017, In : Nature Reviews Microbiology. 15, 11, p. 697-703 7 p.

    Research output: Contribution to journalReview article

  14. Published

    Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection

    Charalampous, T., Kay, G., Richardson, H., Aydin, A., Baldan, R., Jeanes, C., Rae, D., Grundy, S., Turner, D. J., Wain, J., Leggett, R. M., Livermore, D. & O'Grady, J., 24 Jun 2019, In : Nature Biotechnology. 37, p. 783–792

    Research output: Contribution to journalArticle

  15. Published

    Diagnosis of Lower Respiratory Tract Infections using nanopore sequencing

    Charalampous, T., Richardson, H., Kay, G., Baldan, R., Jeanes, C., Turner, D., Wain, J., Livermore, D., Leggett, R. & O'Grady, J., 2018, In : European Respiratory Journal. 52, 2 p., PA5308.

    Research output: Contribution to journalAbstract

  16. Published

    Future of Molecular Diagnostics: The Example of Infectious Diseases

    Clancy, E., Reddington, K., Barry, T., Huggett, J. & O'Grady, J., 1 May 2014, Molecular Diagnostics: Current Research and Applications. Caister Academic Press

    Research output: Chapter in Book/Report/Conference proceedingChapter

  17. Published

    Co-infections: potentially lethal and unexplored in COVID-19

    Cox, M. J., Loman, N., Bogaert, D. & O'Grady, J., May 2020, In : The Lancet Microbe. 1, 1, 1 p., e11.

    Research output: Contribution to journalComment/debate

  18. Published

    Surgery and Tuberculosis

    Cummings, I., O'Grady, J., Pai, V., Kolvekar, S. & Zumla, A., 2012, In : Current Opinion in Pulmonary Medicine. 18, 3, p. 241-245 5 p.

    Research output: Contribution to journalArticle

  19. Published

    Rapid and Point-of-Care Testing in Respiratory Tract Infections: An Antibiotic Guardian?

    Dhesi, Z., Enne, V. I., O'Grady, J., Gant, V. & Livermore, D. M., 12 Jun 2020, In : ACS Pharmacology & Translational Science. 3, 3, p. 401-417 17 p.

    Research output: Contribution to journalReview article

  20. Published

    Integrated microfluidic tmRNA purification and real-time NASBA device for molecular diagnostics.

    Dimov, I. K., Garcia-Cordero, J. L., O'Grady, J., Poulsen, C. R., Viguier, C., Kent, L., Daly, P., Lincoln, B., Maher, M., O'Kennedy, R., Smith, T. J., Ricco, A. J. & Lee, L. P., 2008, In : Lab on a Chip. 8, 12, p. 2071-2078 8 p.

    Research output: Contribution to journalArticle

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