1. 2019
  2. Published

    Sex-specific changes in the aphid DNA methylation landscape

    Mathers, T. C., Mugford, S. T., Percival-Alwyn, L., Chen, Y., Kaithakottil, G., Swarbreck, D., Hogenhout, S. A. & van Oosterhout, C., Sep 2019, In : Molecular Ecology. 28, 18, p. 4228-4241

    Research output: Contribution to journalArticle

  3. Published

    Long-term cleaning patterns of the sharknose goby (Elacatinus evelynae)

    Dunkley, K., Ellison, A. R., Mohammed, R. S., van Oosterhout, C., Whittey, K. E., Perkins, S. E. & Cable, J., Apr 2019, In : Coral Reefs. 38, 2, p. 321–330

    Research output: Contribution to journalArticle

  4. Published

    Evolutionary genomics of anthroponosis in Cryptosporidium

    Nader, J., Mathers, T. C., Ward, B. J., Pachebat, J., Swain, M., Robinson, G., Chalmers, R. M., Hunter, P., Van Oosterhout, C. & Tyler, K., 4 Mar 2019, In : Nature Microbiology. 4, p. 826–836

    Research output: Contribution to journalArticle

  5. Published

    Albugo candida race diversity, ploidy and host‐associated microbes revealed using DNA sequence capture on diseased plants in the field

    Jouet, A., Saunders, D. G. O., McMullan, M., Ward, B., Furzer, O., Jupe, F., Cevik, V., Hein, I., Thilliez, G. J. A., Holub, E., van Oosterhout, C. & Jones, J. D. G., Feb 2019, In : New Phytologist. 221, 3, p. 1529-1543

    Research output: Contribution to journalArticle

  6. Published

    Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes

    Thilliez, G. J. A., Armstrong, M. R., Lim, T-Y., Baker, K., Jouet, A., Ward, B., Van Oosterhout, C., Jones, J. D. G., Huitema, E., Birch, P. R. J. & Hein, I., Feb 2019, In : New Phytologist. 221, 3, p. 1634-1648

    Research output: Contribution to journalArticle

  7. 2018
  8. Published

    Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

    Uren Webster, T. M., Rodriguez-Barreto, D., Martin, S. A. M., Van Oosterhout, C., Orozco-terWengel, P., Cable, J., Hamilton, A., Garcia De Leaniz, C. & Consuegra, S., Dec 2018, In : Epigenetics. 13, 12, p. 1191-1207 17 p.

    Research output: Contribution to journalArticle

  9. Published

    Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

    Thybert, D., Roller, M., Navarro, F. C. P., Fiddes, I., Streeter, I., Feig, C., Martin-Galvez, D., Kolmogorov, M., Janoušek, V., Akanni, W., Aken, B., Aldridge, S., Chakrapani, V., Chow, W., Clarke, L., Cummins, C., Doran, A., Dunn, M., Goodstadt, L., Howe, K. & 26 othersHowell, M., Josselin, A-A., Karn, R. C., Laukaitis, C. M., Jingtao, L., Martin, F., Muffato, M., Nachtweide, S., Quail, M. A., Sisu, C., Stanke, M., Stefflova, K., Van Oosterhout, C., Veyrunes, F., Ward, B., Yang, F., Yazdanifar, G., Zadissa, A., Adams, D. J., Brazma, A., Gerstein, M., Paten, B., Pham, S., Keane, T. M., Odom, D. T. & Flicek, P., Apr 2018, In : Genome Research. 28, 4, p. 448-459

    Research output: Contribution to journalArticle

  10. Published

    Immunogenetic novelty confers a selective advantage in host–pathogen coevolution

    Phillips, K. P., Cable, J., Mohammed, R. S., Herdegen-Radwan, M., Raubic, J., Przesmycka, K. J., Van Oosterhout, C. & Radwan, J., Feb 2018, In : Proceedings of the National Academy of Sciences of the United States of America (PNAS). 115, 7, p. 1552-1557

    Research output: Contribution to journalArticle

  11. 2017
  12. Published

    Evolutionary genetics of immunological supertypes reveals two faces of the Red Queen

    Lighten, J., Papadopulos, A. S. T., Mohammed, R. S., Ward, B. J., Paterson, I., Baillie, L., Bradbury, I. R., Hendry, A. P., Bentzen, P. & Van Oosterhout, C., 3 Nov 2017, In : Nature Communications. 8, 1294.

    Research output: Contribution to journalArticle

  13. Published

    Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus

    Paajanen, P., Strauss, J., van Oosterhout, C., McMullan, M., Clark, M. D. & Mock, T., 10 Oct 2017, In : Scientific Data. 4, 170149.

    Research output: Contribution to journalArticle

  14. Published

    Immigrant reproductive dysfunction facilitates ecological speciation

    Svensson, O., Gräns, J., Celander, M. C., Havenhand, J., Leder, E. H., Lindström, K., Schöld, S., van Oosterhout, C. & Kvarnemo, C., Oct 2017, In : Evolution. 71, 10, p. 2510–2521 12 p.

    Research output: Contribution to journalArticle

  15. Published

    The effects of historical fragmentation on major histocompatibility complex class II β and microsatellite variation in the Aegean island reptile, Podarcis erhardii

    Santonastaso, T., Lighten, J., van Oosterhout, C., Jones, K. L., Foufopoulos, J. & Anthony, N. M., Jul 2017, In : Ecology and Evolution. 7, 13, p. 4568–4581

    Research output: Contribution to journalArticle

  16. Published
  17. Published

    Toll-like receptor variation in the bottlenecked population of the endangered Seychelles warbler

    Gilroy, D. L., Van Oosterhout, C., Komdeur, J. & Richardson, D. S., Jun 2017, In : Animal Conservation. 20, 3, p. 235–250

    Research output: Contribution to journalArticle

  18. Published

    The effect of extrinsic mortality on genome size evolution in prokaryotes

    Bentkowski, P., Van Oosterhout, C., Ashby, B. & Mock, T., Apr 2017, In : The ISME Journal. 11, 4, p. 1011–1018

    Research output: Contribution to journalArticle

  19. Published

    Biocontrol of common carp in Australia poses risks to biosecurity

    Lighten, J. & van Oosterhout, C., 21 Feb 2017, In : Nature Ecology & Evolution. 1, 1 p., 0087.

    Research output: Contribution to journalComment/debate

  20. Published

    The genetics of mate preferences in hybrids between two young and sympatric Lake Victoria cichlid species

    Svensson, O., Woodhouse, K., Van Oosterhout, C., Smith, A., Turner, G. F. & Seehausen, O., 15 Feb 2017, In : Proceedings of the Royal Society of London B. 284, 1849, p. 233-243 11 p., 284.

    Research output: Contribution to journalArticle

  21. Published

    Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

    Mathers, T. C., Chen, Y., Kaithakottil, G., Legeai, F., Mugford, S. T., Baa-Puyoulet, P., Bretaudeau, A., Clavijo, B., Colella, S., Collin, O., Dalmay, T., Derrien, T., Feng, H., Gabaldón, T., Jordan, A., Julca, I., Kettles, G. J., Kowitwanich, K., Lavenier, D., Lenzi, P. & 16 othersLopez-Gomollon, S., Loska, D., Mapleson, D., Maumus, F., Moxon, S., Price, D. R. G., Sugio, A., van Munster, M., Uzest, M., Waite, D., Jander, G., Tagu, D., Wilson, A. C. C., van Oosterhout, C., Swarbreck, D. & Hogenhout, S. A., 13 Feb 2017, In : Genome Biology. 18, 27.

    Research output: Contribution to journalArticle

  22. Published

    Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus

    Mock, T., Otillar, R. P., Strauss, J., McMullan, M., Paajanen, P., Schmutz, J., Salamov, A., Sanges, R., Toseland, A., Ward, B. J., Allen, A. E., Dupont, C. L., Frickenhaus, S., Maumus, F., Veluchamy, A., Wu, T., Barry, K. W., Falciatore, A., Ferrante, M. I., Fortunato, A. E. & 24 othersGlöckner, G., Gruber, A., Hipkin, R., Janech, M. G., Kroth, P. G., Leese, F., Lindquist, E. A., Lyon, B. R., Martin, J., Mayer, C., Parker, M., Quesneville, H., Raymond, J. A., Uhlig, C., Valas, R. E., Valentin, K. U., Worden, A. Z., Armbrust, E. V., Clark, M. D., Bowler, C., Green, B. R., Moulton, V., Van Oosterhout, C. & Grigoriev, I. V., 26 Jan 2017, In : Nature. 541, p. 536–540 5 p.

    Research output: Contribution to journalArticle

  23. 2016
  24. Published

    Genetic architecture and evolution of the S locus supergene in Primula vulgaris

    Li, J., Cocker, J. M., Wright, J., Webster, M. A., McMullan, M., Dyer, S., Swarbreck, D., Caccamo, M., van Oosterhout, C. & Gilmartin, P. M., 2 Dec 2016, In : Nature Plants. 2, 16188.

    Research output: Contribution to journalArticle

  25. Published

    Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae)

    Lighten, J., Incarnato, D., Ward, B. J., van Oosterhout, C., Bradbury, I., Hanson, M. & Bentzen, P., 26 Oct 2016, In : Royal Society Open Science. 3, 160299.

    Research output: Contribution to journalArticle

  26. Published

    The effects of inbreeding on disease susceptibility: Gyrodactylus turnbulli infection of guppies, Poecilia reticulata

    Smallbone, W., van Oosterhout, C. & Cable, J., Aug 2016, In : Experimental Parasitology. 167, p. 32-37 6 p.

    Research output: Contribution to journalArticle

  27. Published

    Getting into hot water: sick guppies frequent warmer thermal conditions

    Mohammed, R. S., Reynolds, M., James, J., Williams, C., Mohammed, A., Ramsubhag, A., van Oosterhout, C. & Cable, J., Jul 2016, In : Oecologia. 181, 3, p. 911–917 7 p.

    Research output: Contribution to journalArticle

  28. Published

    Position, swimming direction and group size of fin whales (Balaenoptera physalus) in the presence of a fast-ferry in the Bay of Biscay

    Aniceto, A. S., Carroll, J., Tetley, M. J. & Van Oosterhout, C., Jul 2016, In : Oceanologia. 58, 3, p. 235–240

    Research output: Contribution to journalArticle

  29. Published

    Avian β-defensin variation in bottlenecked populations: the Seychelles warbler and other congeners

    Gilroy, D., Van Oosterhout, C., Komdeur, J. & Richardson, D. S., Jun 2016, In : Conservation Genetics. 17, 3, p. 661-674 14 p.

    Research output: Contribution to journalArticle

  30. Published

    Population constraints on the Grenada Dove Leptotila wellsi: preliminary findings and proposals from south-west Grenada

    Bolton, N. M., Van Oosterhout, C., Collar, N. J. & Bell, D. J., Jun 2016, In : Bird Conservation International. 26, 02, p. 205-213

    Research output: Contribution to journalArticle

  31. Published

    A further cost for the sicker sex? Evidence for male-biased parasite-induced vulnerability to predation

    Stevenson, J. F., Kinsella, C., Cable, J. & Van Oosterhout, C., Apr 2016, In : Ecology and Evolution. 6, 8, p. 2506–2515

    Research output: Contribution to journalArticle

  32. Published

    Hybridisation generates a hopeful monster: a hermaphroditic selfing cichlid

    Svensson, O., Smith, A., Garcia-Alonso, J. & Van Oosterhout, C., 23 Mar 2016, In : Royal Society Open Science. 3, 150684.

    Research output: Contribution to journalArticle

  33. Published
  34. 2015
  35. Published

    Pace of life, predators and parasites: predator-induced life-history evolution in Trinidadian guppies predicts decrease in parasite tolerance.

    Stephenson, J. F., van Oosterhout, C. & Cable, J., 4 Nov 2015, In : Biology Letters. 11, 11, 4 p., 20150806.

    Research output: Contribution to journalArticle

  36. Published

    The effects of recombination, mutation and selection on the evolution of the Rp1resistance genes in grasses

    Jouet, A., Mcmullan, M. & Van Oosterhout, C., 1 Jun 2015, In : Molecular Ecology. 24, 12, p. 3077-3092

    Research output: Contribution to journalArticle

  37. Published

    Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite

    McMullan, M., Gardiner, A., Bailey, K., Kemen, E., Ward, B. J., Cevik, V., Robert-Seilaniantz, A., Schultz-Larsen, T., Balmuth, A., Holub, E., Van Oosterhout, C. & Jones, J. D. G., Apr 2015, In : eLife. 4, e04550.

    Research output: Contribution to journalArticle

  38. Published

    Parasites of Trinidadian guppies: evidence for sex- and age-specific trait-mediated indirect effects of predators

    Stephenson, J. F., Van Oosterhout, C., Mohammed, R. S. & Cable, J., 1 Feb 2015, In : Ecology. 96, 2, p. 489-498 10 p.

    Research output: Contribution to journalArticle

  39. Published

    Evidence for cryptic speciation in directly transmitted Gyrodactylid parasites of Trinidadian guppies

    Xavier, R., Faria, P. J., Paladini, G., Van Oosterhout, C., Johnson, M. & Cable, J., 9 Jan 2015, In : PLoS One. 10, 1, e0117096.

    Research output: Contribution to journalArticle

  40. Published

    Secondary contact seeds morphological novelty in cichlid fishes

    Nichols, P., Genner, M. J., Van Oosterhout, C., Smith, A., Parsons, P., Sungani, H., Swanstrom, J. & Joyce, D. A., 7 Jan 2015, In : Proceedings of the Royal Society of London B. 282, 1798

    Research output: Contribution to journalArticle

  41. Published

    Human induced stepping-stone colonisation of an admixed founder population: the spread of topmouth gudgeon (Pseudorasbora parva) in Europe

    Simon, A., Gozlan, R. E., Robert Britton, J., Van Oosterhout, C. & Hänfling, B., Jan 2015, In : Aquatic Sciences. 77, 1, p. 17-25 9 p.

    Research output: Contribution to journalArticle

  42. Published

    A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments

    Van Oosterhout, C., Mock, T. & Bentkowski, P., 2015, In : Genome Biology and Evolution. 7, 8, p. 2344–2351 8 p.

    Research output: Contribution to journalArticle

  43. 2014
  44. Published

    Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago

    Tezuka, A., Kasagi, S., Van Oosterhout, C., Mcmullan, M., Iwasaki, W. M., Kasai, D., Yamamichi, M., Innan, H., Kawamura, S. & Kawata, M., Nov 2014, In : Heredity. 113, p. 381-389 9 p.

    Research output: Contribution to journalArticle

  45. Published

    Critical review of NGS analyses for de novo genotyping multigene families

    Lighten, J., Van Oosterhout, C. & Bentzen, P., 1 Aug 2014, In : Molecular Ecology. 23, 16, p. 3957-3972

    Research output: Contribution to journalArticle

  46. Published

    Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana

    Li, P., Filiault, D., Box, M. S., Kerdaffrec, E., van Oosterhout, C., Wilczek, A. M., Schmitt, J., Mcmullan, M., Bergelson, J., Nordborg, M. & Dean, C., 1 Aug 2014, In : Genes & Development. 28, 15, p. 1635-1640 6 p.

    Research output: Contribution to journalArticle

  47. Published

    Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata)

    Lighten, J., Van Oosterhout, C., Paterson, I. G., McMullan, M. & Bentzen, P., 1 Jul 2014, In : Molecular Ecology Resources. 14, 4, p. 753-767

    Research output: Contribution to journalArticle

  48. 2013
  49. Published

    Entering uncharted waters: Long-term dynamics of two data limited fish species, turbot and brill, in the North Sea

    Kerby, T. K., Cheung, W. W. L., van Oosterhout, C. & Engelhard, G. H., Nov 2013, In : Journal of Sea Research. 84, p. 87-95 8 p.

    Research output: Contribution to journalArticle

  50. Published

    High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study

    Hoban, S. M., Mezzavilla, M., Gaggiotti, O. E., Benazzo, A., Van Oosterhout, C. & Bertorelle, G., 16 Oct 2013, In : BMC Bioinformatics. 14, 309.

    Research output: Contribution to journalArticle

  51. Published

    Can parasites use predators to spread between primary hosts?

    Cable, J., Archard, G. A., Mohammed, R. S., Mcmullan, M., Stephenson, J. F., Hansen, H. & Van Oosterhout, C., 1 Aug 2013, In : Parasitology. 140, 09, p. 1138-1143

    Research output: Contribution to journalArticle

  52. Published

    Wondering about wandering whiting: Distribution of North Sea whiting between the 1920s and 2000s

    Kerby, T. K., Cheung, W. W. L., Van Oosterhout, C. & Engelhard, G. H., 1 Aug 2013, In : Fisheries Research. 145, p. 54-65

    Research output: Contribution to journalArticle

  53. Published

    Invasive freshwater snails provide resource for native marine hermit crabs

    Van Oosterhout, C., Mohammed, R., Xavier, R., Stephenson, J., Archard, G., Hockley, F., Perkins, S. & Cable, J., Jun 2013, In : Aquatic Invasions. 8, 2, p. 185-191 7 p.

    Research output: Contribution to journalArticle

  54. Published

    Experimental harvesting of fish populations drives genetically based shifts in body size and maturation

    Van Wijk, S. J., Taylor, M. I., Creer, S., Dreyer, C., Rodrigues, F. M., Ramnarine, I. W., Van Oosterhout, C. & Carvalho, G. R., 1 May 2013, In : Frontiers in Ecology & the Environment. 11, 4, p. 181-187 7 p.

    Research output: Contribution to journalArticle

  55. Published
  56. Published

    Mendelian Inheritance Pattern and High Mutation Rates of Microsatellite Alleles in the Diatom Pseudo-nitzchia multistriata

    Tesson, S. V. M., Legrand, C., van Oosterhout, C., Montresor, M., Kooistra, W. H. C. F. & Procaccini, G., Jan 2013, In : Protist. 164, 1, p. 89-100 12 p.

    Research output: Contribution to journalArticle

  57. 2012
  58. Published

    Interactions between male guppies facilitates the transmission of the mongenean ectoparasite Gyrodactylus turnbulli

    Richards, E. L., Van Oosterhout, C. & Cable, J., Dec 2012, In : Experimental Parasitology. 132, 4, p. 483-486 4 p.

    Research output: Contribution to journalArticle

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